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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.

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publications

Data discovery with DATS: exemplar adoptions and lessons learned

Published in Journal of the American Medical Informatics Association, 2017

This paper analyses the implementation of the DATS model for data discovery in a set of exemplar data sources Read more

Recommended citation: Alejandra N Gonzalez-Beltran, John Campbell, Patrick Dunn, Diana Guijarro, Sanda Ionescu, Hyeoneui Kim, Jared Lyle, Jeffrey Wiser, Susanna-Assunta Sansone, Philippe Rocca-Serra. "Data discovery with DATS: exemplar adoptions and lessons learned" Journal of the American Medical Informatics Association, Volume 25, Issue 1, 1 January 2018, Pages 13–16, https://doi.org/10.1093/jamia/ocx119 https://doi.org/10.1093/jamia/ocx119

Discovering Data Access and Use Requirements Using the Data Tag Suite (DATS)

Published in bioRxiv, 2019

This paper is about the representation of data access and data use requirements for the Data Tag Suite (DATS) model. Read more

Recommended citation: Discovering Data Access and Use Requirements Using the Data Tag Suite (DATS) Model George Alter, Alejandra Gonzalez-Beltran, Lucila Ohno-Machado, Philippe Rocca-Serra bioRxiv 518571; doi: https://doi.org/10.1101/518571 https://doi.org/10.1101/518571

FAIRsharing as a community approach to standards, repositories and policies

Published in Nature Biotechnology, 2019

Read more

Recommended citation: FAIRsharing as a community approach to standards, repositories and policies Susanna-Assunta Sansone, Peter McQuilton, Philippe Rocca-Serra, Alejandra Gonzalez-Beltran, Massimiliano Izzo, Allyson L. Lister, Milo Thurston & the FAIRsharing Community Nat Biotechnol. 2019 Apr;37(4):358-367. doi: https://doi.org/10.1038/s41587-019-0080-8 https://doi.org/10.1038/s41587-019-0080-8

talks

What was the plan? A role for data standards, models and computational workflows in scholarly data publishing

Published:

This talk explores how principles derived from experimental design practice, data and computational models can greatly enhance data quality, data generation, data reporting, data publication and data review. For this, I presented a case study on reproducibility that was a collaboration between the GigaScience journal and the ISA-commons, Research Object and Nanopublication communities. You can read more about my presentation in Scott Edmund’s blog post for the GigaScience Journal and see my slides can be found below. Read more

EBI Metagenomics Bioinfomatics Course

Published:

Within the Metagenomics Bioinformatics Course, Eamonn Maguire and I gave a tutorial on “Metagenomic Data Provenance and Management using the ISA infrastructure — overview, implementation patterns & software tools”. Read more

teaching

EBI Metagenomics Bioinfomatics Course

Training, EMBL-EBI, 2014

Within the Metagenomics Bioinformatics Course, Eamonn Maguire and I gave a tutorial on “Metagenomic Data Provenance and Management using the ISA infrastructure — overview, implementation patterns & software tools”. Read more